Blue Bloods:

1. Alabama
2nd nationally all-time wins: 965
1st nationally national championships: 13
1st SEC championships: 30
6 national championships since 2000
9 conference championships since 2000

2. Oklahoma
6th nationally all-time wins: 944
3rd nationally national championships: 7
Conference championships: 50 (obviously, no SEC championships)
1 national championships since 2000
14 conference championships since 2000

3. Georgia
9th nationally all-time wins: 881
t11th nationally national championships: 3
2nd SEC championships: 14
2 national championships since 2000
4 conference championships since 2000

Upper Class:

4. LSU
12th nationally all-time wins: 806
t8th nationally national championships: 4
4th SEC championships: 12
3 national championships since 2000
5 conference championships since 2000

5. Texas
t4th nationally all-time wins: 948
t8th nationally national championships: 4
Conference championships: 33 (note: 29 are SWC or previous)
1 national championships since 2000
3 conference championships since 2000

6. Tennessee
10th nationally all-time wins: 865
t15th nationally national championships: 2
3rd SEC championships: 13
0 national championships since 2000
0 conference championships since 2000

Upper-Middle Class:

7. Florida
20th nationally all-time wins: 758
t11th nationally national championships: 3
t4th SEC championships: 8
2 national championships since 2000
3 conference championships since 2000

8. Auburn
13th nationally all-time wins: 799
t15th nationally national championships: 2
t4th SEC championships: 8
1 national championships since 2000 (in my heart, they should also get credit for 2004)
3 conference championships since 2000

Middle Class:

9. Texas A&M
16th nationally all-time wins: 778
t22nd: nationally national championships: 1 (1939, baby)
Conference championships: 18 (17 SWC, 1 Big 12, 0 SEC)
0 national championships since 2000
0 conference championships since 2000

10. Arkansas
24th nationally all-time wins: 740
0 national championships (did finish 11-0 in 1964, but finished second in both polls)
Conference championships: 13 (13 SWC, 0 SEC)
0 national championships since 2000
0 conference championships since 2000

11. Missouri
33rd nationally all-time wins: 711
0 national championships
Conference championships: 15 (15 Big Eight, 0 SEC)
0 national championships since 2000
0 conference championships since 2000

12. Ole Miss
41st nationally all-time wins: 675
0 national championships (they claim 3, including an undefeated 1962 season, but never finished higher than 2nd in polls)
7th SEC championships: 6
0 national championships since 2000
0 conference championships since 2000

Lower Class:

13. Kentucky
47th nationally all-time wins: 653
0 national championships
8th SEC championships: 2 (including co-championship 1976 in which Mississippi State forfeited a win against Kentucky)
0 national championships since 2000
0 conference championships since 2000

14. South Carolina
56th nationally all-time wins: 635
0 national championships
1 conference championship (1969 ACC)
0 national championships since 2000
0 conference championships since 2000

15. Mississippi State
72nd nationally all-time wins: 594
0 national championships
9th SEC championships: 1 (1941)
0 national championships since 2000
0 conference championships since 2000

16. Vanderbilt
62nd nationally all-time wins: 618
0 national championships
t16th SEC championships: 0
0 national championships since 2000
0 conference championships since 2000

*National championships counted are those when school finished 1st in Coaches and/or AP poll since 1936