re: Better All-Time Baseball Program. Bama, Auburn, or Mississippi State?

Better All-Time overall is a 2 horse race.

...Mississippi State based on overall win %, 10 more NCAA regionals, 2 more Super Regionals, 4 more CWS appearances.

what a coincidence that both programs came into the 2015 season with 2496 wins each.

Mississippi State

2496-1460-28 (.630%)
876-755-1 (.537%) in SEC play
10 SEC Championships
7 SEC Tournament Championships
34 NCAA Regionals
5 Super Regionals
9 CWS
1 National Runner-Up
NCAA Tournament Record 94-76 (.553%)

Alabama

2496-1517-23 (.621%)
910-743-4 (550%) in SEC play
14 SEC Championships
7 SEC Tournament Championships
24 NCAA Regionals
3 Super Regionals
5 CWS
2 National Runner-Up
NCAA Tournament Record 70-49 (.588%)

better All-Time in SEC play only would favor Alabama. 21 combined SEC Championships and higher all-time SEC win %. Mississippi State has 17 combined SEC Championships - reg. season/tournament.

2015 SEC Baseball Media Guide